How Large Language Models Work: From tokenization to Output

Subham Sharma
August 1, 2025

Large Language Models (LLMs) like GPT, Claude, and Gemini have transformed how machines interact with human language. Beyond this impressive fluency lies a deep system of mathematical modeling, data processing, and pattern recognition.

This blog walks through how LLMs work — from raw text input to final generated output — with a focus on the foundational concepts: tokenization, embedding, transformers, and prediction.

What is a Large Language Model?

At a basic level, a Large Language Model is a type of artificial intelligence designed to understand and generate human-like language. It’s “large” because it contains billions (or even trillions) of parameters – the internal settings that define how the model responds to text inputs. Training a model involves billions of examples and results in a system with millions or billions of parameters — numerical values the model adjusts during learning to improve its predictions.

In other words, it is a neural network trained to predict the next word (or token) in a sequence. It's not programmed with explicit rules — instead, it learns statistical patterns in large amounts of text data. For example, "I went to the market to buy something fresh..."
The model predicts: "...fruits and vegetables for dinner tonight."

Step One: tokenization

Before any text can be processed, it must be broken down into smaller units. This step is called tokenization.

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Image reference: https://zitniklab.hms.harvard.edu/projects/MedTok/

Why tokenize?

Computers don't understand words or grammar. They understand numbers. So we convert words into manageable chunks (tokens) and then assign each one a unique ID.

  • Some tokenizers use word-based tokens: “The cat sat” → [“The”, “cat”, “sat”]
  • Others use subword tokens: “unbelievable” → [“un”, “believ”, “able”]
  • GPT models use byte pair encoding (BPE) to tokenize efficiently

The result: Input text → token sequence → integer IDs

Example: “The dog runs” → [1212, 92, 3190] (IDs depend on the model’s vocabulary)

Step Two: Embeddings

Once the text is tokenized into IDs, those IDs need to be transformed into vectors — numerical representations that capture relationships between tokens.

These vectors are called token embeddings. For example, the word “king” might be represented as a 768-dimensional vector with floating-point values.

The idea is that similar words (like “king” and “queen”) will have similar vector representations. This allows the model to reason about semantic similarity.

At this point, each token is now a point in a high-dimensional space.

Image reference: https://pub.aimind.so/llm-embeddings-explained-simply-f7536d3d0e4b

Step Three: Contextual Processing with Transformers

The transformer architecture, introduced by Vaswani et al. in 2017, is the foundation of modern LLMs. It's what allows models to process sequences of text in a way that captures meaning and context.

Key components of transformers:

a. Attention Mechanism

The core innovation is self-attention — the ability of the model to determine which parts of the input are most relevant to a given token.

Example: In the sentence “The dog chased the cat because it was fast,” attention helps resolve that “it” refers to “cat”.

b. Multi-Head Attention

Instead of using one attention calculation, transformers use multiple "heads" to capture different types of relationships between words — syntax, grammar, meaning, etc.

c. Layers and Depth

Transformers are composed of many stacked layers. Each layer refines the token vectors based on increasingly abstract patterns.

Step Four: Generating Output (Prediction)

Once the input has been processed through the transformer stack, the model produces a final vector for each token position. These are fed into a softmax classifier, which outputs a probability distribution over the vocabulary for the next token.

For example:

  • The model might predict: "The sky is" → [“blue”: 82%, “falling”: 8%, “dark”: 5%, …]
  • The model selects “blue” and adds it to the sequence.

This process repeats token by token until a stopping condition is reached (such as an end-of-sentence token or length limit).

Fine-Tuning and Prompting

After the base model is trained (pretraining), it can be:

  • Fine-tuned on specific domains (e.g., legal, medical)
  • Used with prompt engineering to steer behavior (e.g., “Summarize this paragraph”)

Advanced models can also use retrieval augmentation, tools, or memory to improve factual accuracy and continuity — though these are external to the LLM core.

Common Issues in LLM Outputs:

Because the model is predicting rather than fact-checking, certain problems can arise:

1. Hallucination

What it is: The model generates false or fictional information with high confidence.

Example: “The Eiffel Tower is in Berlin.”

Why it happens: The model aims for fluency, not accuracy. It doesn't have a built-in fact-checking mechanism.

2. Bias

What it is: Outputs reflect biases present in the training data.

Types: Gender, racial, cultural, political.

Example: Associating leadership with male pronouns more often than female.

Why it happens: Models absorb patterns from real-world data, which itself is often biased.

Summary: The End-to-End Pipeline

Here’s a simplified flow of how an LLM processes text:

  1. Input text: “The market is volatile.”
  2. tokenization: [“The”, “market”, “is”, “vol”, “atile”, “.”]
  3. Embedding: Convert tokens into dense vectors
  4. Transformer layers: Apply self-attention and deep pattern recognition
  5. Softmax output: Predict next token based on learned probabilities
  6. Detokenize: Convert final token sequence back to readable text

Final Thoughts

LLMs don’t think, reason, or understand language the way humans do. But by learning statistical patterns in vast amounts of data and representing text as mathematical structures, they can mimic understanding impressively well.

Understanding tokenization, embeddings, and transformers is key to working effectively with LLMs — whether you’re a developer, product manager, or enterprise architect.

If you’re using LLMs in your business, this knowledge can help you interpret their output, design better prompts, and understand where human oversight is essential.

References: 

https://poloclub.github.io/#page-top

https://zitniklab.hms.harvard.edu/projects/MedTok/

https://arxiv.org/abs/1706.03762

https://pub.aimind.so/llm-embeddings-explained-simply-f7536d3d0e4b

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